The Historic Figures in Jay’s Painting, “Reformation Wall.”
The Reformation Wall in Geneva from left to right: William Farel, John Calvin, Theodore Beza, and John Knox
William Farel
(1489 – 13 September 1565), Guilhem Farel or Guillaume Farel, was a French evangelist, and a founder of the Reformed Church in the cantons of Neuchâtel, Berne, Geneva, and Vaud in Switzerland. He is most often remembered for having persuaded John Calvin to remain in Geneva in 1536, and for persuading him to return there in 1541, after their expulsion in 1538. They influenced the government of Geneva to the point that it became the "Protestant Rome", where Protestants took refuge and non-Protestants were driven out. Together with Calvin, Farel worked to train missionary preachers who spread the Protestant cause to other countries, and especially to France.
Farel was born in Gap, Hautes-Alpes. He was a pupil of the pro-reform Catholic priest, at the University of Paris, in the earliest years of the Reformation. There he met the scholar Jacques Lefevre d'Etaples who helped Farel obtain a professorship to teach grammar and philosophy at the Collège Cardinal Lemoine in Paris. With Lefevre he became a member of the Cercle de Meaux gathered together from 1519 by the reform-minded bishop of Meaux, Guillaume Briçonnet. Farel eventually became regent of the college. By 1522 he was appointed a diocesan preacher by the Reformist bishop of Meaux, Guillaume Briçonnet. Farel now could invited a number of evangelical Humanists to work in his diocese to help implement his reform program within the Catholic Church.
He was forced to flee to Switzerland because of controversy that was aroused by his writings against the use of images in Christian worship. He spent time at Zurich with Huldrych Zwingli and at Strasbourg, with Martin Bucer. He convinced Neuchâtel to join the Reform in 1530. He established himself in Geneva in 1532, where he remained as minister, drawing Calvin to the city, but breaking with him over the Eucharist. He was banished from Geneva in 1538, in part for his rigorous positions, and retired to Neuchâtel, where he died. Although Farel was a friend of Calvin's, he was a promoter of Lutheran ideas in his youth.[8]
John Calvin
(French: Jean Calvin, born Jehan Cauvin: 10 July 1509 – 27 May 1564) was an influential French theologian and pastor during the Protestant Reformation. He was a principal figure in the development of the system of Christian theology later called Calvinism. Originally trained as a humanist lawyer, he broke from the Roman Catholic Church around 1530. After religious tensions provoked a violent uprising against Protestants in France, Calvin fled to Basel, Switzerland, where he published the first edition of his seminal work The Institutes of the Christian Religion in 1536.
In that year, Calvin was recruited by William Farel to help reform the church in Geneva. The city council resisted the implementation of Calvin's and Farel's ideas, and both men were expelled. At the invitation of Martin Bucer, Calvin proceeded to Strasbourg, where he became the minister of a church of French refugees. He continued to support the reform movement in Geneva, and was eventually invited back to lead its church. Following his return, Calvin introduced new forms of church government and liturgy, despite the opposition of several powerful families in the city who tried to curb his authority. During this period, Michael Servetus, a Spaniard known for his heretical views, arrived in Geneva. He was denounced by Calvin and executed by the city council. Following an influx of supportive refugees and new elections to the city council, Calvin's opponents were forced out. Calvin spent his final years promoting the Reformation both in Geneva and throughout Europe.
Calvin was a tireless polemic (able to mount solid arguments for truth in defeating error) and apologetic writer who generated much controversy. He also exchanged cordial and supportive letters with many reformers, including Philipp Melanchthon and Heinrich Bullinger. In addition to the Institutes, he wrote commentaries on most books of the Bible, as well as theological treatises and confessional documents. He regularly preached sermons throughout the week in Geneva. Calvin was influenced by the Augustinian tradition, which led him to expound the doctrine of predestination and the absolute sovereignty of God in salvation of the human soul from death and eternal damnation. Calvin's writing and preaching provided the seeds for the branch of theology that bears his name. The Reformed, Congregational, and Presbyterian churches, which look to Calvin as the chief expositor of their beliefs, have spread throughout the world.
During his ministry in Geneva, Calvin preached over two thousand sermons. Initially he preached twice on Sunday and three times during the week. This proved to be too heavy a burden and late in 1542 the council allowed him to preach only once on Sunday. However, in October 1549, he was again required to preach twice on Sundays and, in addition, every weekday of alternate weeks. His sermons lasted more than an hour and he did not use notes. An occasional secretary tried to record his sermons, but very little of his preaching was preserved before 1549. In that year, professional scribe Denis Raguenier, who had learned or developed a system of shorthand, was assigned to record all of Calvin's sermons. An analysis of his sermons by T.H.L. Parker suggests that Calvin was a consistent preacher and his style changed very little over the years.
Calvin sheltered Marian exiles (those who fled the reign of Catholic Mary Tudor in England) in Geneva starting in 1555. Under the city's protection, they were able to form their own reformed church under John Knox and William Whittingham and eventually carried Calvin's ideas on doctrine and polity back to England and Scotland. However, Calvin was most interested in reforming his homeland, France. He supported the building of churches by distributing literature and sending ministers. Between 1555 and 1562, more than 100 ministers were sent to France. These efforts were funded by the church in Geneva, as the city council had refused to become involved in missionary activities at the time. Henry II severely persecuted Protestants under the Edict of Chateaubriand and when the French authorities complained about the missionary activities, Geneva was able to disclaim responsibility.
Calvin developed his theology in his biblical commentaries as well as his sermons and treatises, but the most concise expression of his views is found in his magnum opus, the Institutes of the Christian Religion. He intended that the book be used as a summary of his views on Christian theology and that it be read in conjunction with his commentaries. The first statement in the Institutes acknowledges its central theme. It states that the sum of human wisdom consists of two parts: the knowledge of God and of ourselves. Calvin argues that the knowledge of God is not inherent in humanity nor can it be discovered by observing this world. The only way to obtain it is to study scripture. Calvin writes, "For anyone to arrive at God the Creator he needs Scripture as his Guide and Teacher." He does not try to prove the authority of scripture but rather describes it as autopiston or self-authenticating. He defends the trinitarian view of God and, in a strong polemical stand against the Catholic Church, argues that images of God lead to idolatry. At the end of the first book, he offers his views on providence, writing, "By his Power God cherishes and guards the World which he made and by his Providence rules its individual Parts." Humans are unable to fully comprehend why God performs any particular action, but whatever good or evil people may practice, their efforts always result in the execution of God's will and judgments.
The second book includes several essays on the original sin and the fall of man, which directly refer to Augustine, who developed these doctrines. He often cited the Church Fathers in order to defend the reformed cause against the charge that the reformers were creating new theology. In Calvin's view, sin began with the fall of Adam and propagated to all of humanity. The domination of sin is complete to the point that people are driven to evil. Thus fallen humanity is in need of the redemption that can be found in Christ. But before Calvin expounded on this doctrine, he described the special situation of the Jews who lived during the time of the Old Testament. God made a covenant with Abraham, promising the coming of Christ. Hence, the Old Covenant was not in opposition to Christ, but was rather a continuation of God's promise. Calvin then describes the New Covenant using the passage from the Apostles' Creed that describes Christ's suffering under Pontius Pilate and his return to judge the living and the dead. For Calvin, the whole course of Christ's obedience to the Father removed the discord between humanity and God.
In the third book, Calvin describes how the spiritual union of Christ and humanity is achieved. He first defines faith as the firm and certain knowledge of God in Christ. The immediate effects of faith are repentance and the remission of sin. This is followed by spiritual regeneration, which returns the believer to the state of holiness before Adam's transgression. However, complete perfection is unattainable in this life, and the believer should expect a continual struggle against sin. Several chapters are then devoted to the subject of justification by faith alone. He defined justification as "the acceptance by which God regards us as righteous whom he has received into grace." In this definition, it is clear that it is God who initiates and carries through the action and that people play no role; God is completely sovereign in salvation. Near the end of the book, Calvin describes and defends the doctrine of predestination, a doctrine advanced by Augustine in opposition to the teachings of Pelagius. Fellow theologians who followed the Augustinian tradition on this point included Thomas Aquinas and Martin Luther, though Calvin's formulation of the doctrine went further than the tradition that went before him. The principle, in Calvin's words, is that "All are not created on equal terms, but some are preordained to eternal life, others to eternal damnation; and, accordingly, as each has been created for one or other of these ends, we say that he has been predestinated to life or to death."
The final book describes what he considers to be the true Church and its ministry, authority, and sacraments. He denied the papal claim to primacy and the accusation that the reformers were schismatic. For Calvin, the Church was defined as the body of believers who placed Christ at its head. By definition, there was only one "catholic" or "universal" Church. Hence, he argued that the reformers "had to leave them in order that we might come to Christ." The ministers of the Church are described from a passage from Ephesians, and they consisted of apostles, prophets, evangelists, pastors, and doctors. Calvin regarded the first three offices as temporary, limited in their existence to the time of the New Testament. The latter two offices were established in the church in Geneva. Although Calvin respected the work of the ecumenical councils, he considered them to be subject to God's Word found in scripture. He also believed that the civil and church authorities were separate and should not interfere with each other.
Calvin produced commentaries on most of the books of the Bible. His first commentary on Romans was published in 1540, and he planned to write commentaries on the entire New Testament. Six years passed before he wrote his second, a commentary on I Corinthians, but after that he devoted more attention to reaching his goal. Within four years he had published commentaries on all the Pauline epistles, and he also revised the commentary on Romans. He then turned his attention to the general epistles, dedicating them to Edward VI of England. By 1555 he had completed his work on the New Testament, finishing with the Acts and the Gospels (he omitted only the brief second and third Epistles of John and the Book of Revelation). For the Old Testament, he wrote commentaries on Isaiah, the books of the Pentateuch, the Psalms, and Joshua. The material for the commentaries often originated from lectures to students and ministers that he reworked for publication. However, from 1557 onwards, he could not find the time to continue this method, and he gave permission for his lectures to be published from stenographers' notes. These Praelectiones covered the minor prophets, Daniel, Jeremiah, Lamentations, and part of Ezekiel.
Calvin did not live to see the foundation of his work grow into an international movement; but his death allowed his ideas to break out of their city of origin, to succeed far beyond their borders, and to establish their own distinct character. Calvin is recognized as a Renewer of the Church in Lutheran churches, and as a saint in the Church of England, commemorated on 26 May.
Theodore Beza
(Latin ‘Theodorus Beza', French Théodore de Bèze or de Besze) (June 24, 1519 – October 13, 1605) was a French Protestant Christian theologian and scholar who played an important role in the Reformation. A member of the monarchomaque movement who opposed absolute monarchy, he was a disciple of John Calvin and lived most of his life in Switzerland.
Beza spent two years in Paris and gained a prominent position in literary circles. In 1548 he published a collection of Latin poetry, Juvenilia, which made him famous, and he was widely considered one of the best writers of Latin poetry of his time. Shortly after the publication of his book, he fell ill and his illness, it is reported, revealed to him his spiritual needs. Gradually he came to accept salvation in Christ, which lifted his spirits. He then resolved to sever his connections of the time, and went to Geneva, the French city of refuge for Evangelicals (adherents of the Reformation movement), where he arrived with on October 23, 1548.
He was received by John Calvin, who had met him already in Wolmar's house, and was married in the church. Beza was at a loss for immediate occupation, so he went to Tübingen to see his former teacher Wolmar. On his way home he visited Pierre Viret at Lausanne, who brought about his appointment as professor of Greek at the academy there (Nov., 1549). Beza found time to write a Biblical drama, Abraham Sacrifiant, in which he contrasted Catholicism with Protestantism, and the work was well received. In June, 1551, he added a few psalms to the French version of the Psalms begun by Clément Marot, which was also very successful.
In 1557, Beza took a special interest in the Waldensians of Piedmont, who were being harassed by the French government. On their behalf, he went with William Farel to Bern, Zürich, Basel, and Schaffhausen, then to Strasburg, Mömpelgard, Baden, and Göppingen.
More important than this polemical activity was Beza's statement of his own confession. It was originally prepared for his father in justification of his actions and published in revised form to promote Evangelical knowledge among Beza's countrymen. It was printed in Latin in 1560 with a dedication to Wolmar. An English translation was published at London 1563, 1572, and 1585. Translations into German, Dutch, and Italian were also issued.
Until 1580 Beza was not only moderateur de la compagnie des pasteurs, but also the real soul of the great institution of learning at Geneva which Calvin had founded in 1559, consisting of a gymnasium and an academy. As long as he lived, Beza was interested in higher education. The Protestant youth for nearly forty years thronged his lecture-room to hear his theological lectures, in which he expounded the purest Calvinistic orthodoxy. As a counselor he was listened to by both magistrates and pastors. Geneva is indebted to him for the founding of a law school in which François Hotman, Jules Pacius, and Denys Godefroy, the most eminent jurists of the century, lectured in turn (cf. Charles Borgeaud, L'Academie de Calvin, Geneva, 1900).
As Calvin's successor, Beza was very successful, not only in carrying on his work but also in giving peace to the Church at Geneva. The magistrates had fully appropriated the ideas of Calvin, and the direction of spiritual affairs, the organs of which were the "ministers of the word" and "the consistory", was founded on a solid basis. No doctrinal controversy arose after 1564. The discussions concerned questions of a practical, social, or ecclesiastical nature, such as the supremacy of the magistrates over the pastors, freedom in preaching, and the obligation of the pastors to submit to the majority of the campagnie des pasteurs.
His activity was great. He mediated between the compagnie and the magistracy; the latter continually asked his advice even in political questions. He corresponded with all the leaders of the Reformed party in Europe. After the St. Bartholomew's Day Massacre (1572), he used his influence to give to the refugees a hospitable reception at Geneva. In 1574 he wrote his De jure magistratuum (Right of Magistrates), in which he emphatically protested against tyranny in religious matters, and affirmed that it is legitimate for a people to oppose an unworthy magistracy in a practical manner and if necessary to use weapons and depose them.
To sum up: Without being a great dogmatician like his master, nor a creative genius in the ecclesiastical realm, Beza had qualities which made him famous as humanist, exegete, orator, and leader in religious and political affairs, and qualified him to be the guide of the Calvinists in all Europe. In the various controversies into which he was drawn, Beza often showed an excess of irritation and intolerance, from which Bernardino Ochino, pastor of the Italian congregation at Zurich (on account of a treatise which contained some objectionable points on polygamy), and Sebastian Castellio at Basel (on account of his Latin and French translations of the Bible) had especially to suffer.
In Beza's literary activity as well as in his life, distinction must be made between the period of the humanist (which ended with the publication of his Juvenilia) and that of the ecclesiastic. Combining his pastoral and literary gifts, Beza wrote the first drama produced in French, Abrahm Sacrifiant; a play that is an antecedent to the work of Racine and is still occasionally produced today. Later productions like the humanistic, biting, satirical Passavantius and his Complainte de Messire Pierre Lizet... prove that in later years he occasionally went back to his first love. In his old age he published his Cato censorius (1591), and revised his Poemata, from which he purged juvenile eccentricities.
Beza's De vera excommunicatione et Christiano presbyterio (1590), written as a response to Thomas Erastus's Explicatio gravissimae quaestionis utrum excommunicatio (1589) contributed an important defense of the right of ecclesiastical authorities (rather than civil authorities) to excommunicate. Of no less importance are the contributions of Beza to Biblical scholarship. In 1565 he issued an edition of the Greek New Testament, accompanied in parallel columns by the text of the Vulgate and a translation of his own (already published as early as 1556). Annotations were added, also previously published, but now he greatly enriched and enlarged them.
John Knox
(c. 1514 – 24 November 1572) was a Scottish clergyman and a leader of the Protestant Reformation who is considered the founder of the Presbyterian denomination in Scotland. He was believed to have been educated at the University of St Andrews and worked as a notary-priest. Influenced by early church reformers such as George Wishart, he joined the movement to reform the Scottish church. He was caught up in the ecclesiastical and political events that involved the murder of Cardinal Beaton in 1546 and the intervention of the regent of Scotland Mary of Guise. He was taken prisoner by French forces the following year and exiled to England on his release in 1549.
While in exile, Knox was licensed to work in the Church of England, where he rose in the ranks to serve King Edward VI of England as a royal chaplain. He exerted a reforming influence on the text of the Book of Common Prayer. On his return to Scotland he led the Protestant Reformation in Scotland, in partnership with the Scottish Protestant nobility. The movement may be seen as a revolution, since it led to the ousting of Mary of Guise, who governed the country in the name of her young daughter Mary, Queen of Scots. Knox helped write the new confession of faith and the ecclesiastical order for the newly created reformed church, the Kirk. He continued to serve as the religious leader of the Protestants throughout Mary's reign. In several interviews with the Queen, Knox admonished her for supporting Catholic practices.
Knox's powers as a preacher came to the attention of the chaplain of the garrison, John Rough. While Rough was preaching in the parish church on the Protestant principle of the popular election of a pastor, he proposed Knox to the congregation for that office. Knox did not relish the idea. According to his own account, he burst into tears and fled to his room. Within a week, however, he was giving his first sermon to a congregation that included his old teacher, John Major. He expounded on the seventh chapter of the Book of Daniel, comparing the Pope with the Antichrist.
Knox's chaplaincy of the castle garrison was not to last long. While Hamilton was willing to negotiate with England to stop their support of the rebels and bring the castle back under his control, Mary of Guise decided that it could only be taken by force and requested the king of France, Henry II to intervene. On 29 June 1547, 21 French galleys approached St Andrews under the command of Leone Strozzi, prior of Capua. The French besieged the castle and forced the surrender of the garrison on 31 July. The Protestant nobles and others, including Knox, were taken prisoner and forced to row in the French galleys. The galley slaves were chained to benches and rowed throughout the day without a change of posture while an officer watched over them with a whip in hand.
Knox and the other galley slaves continued to Nantes and stayed on the Loire throughout the winter. They were threatened with torture if they did not give proper signs of reverence when mass was performed on the ship. Knox recounted an incident in which one Scot—possibly himself, as he tended to narrate personal anecdotes in the third person—was required to show devotion to a picture of the Virgin Mary. The prisoner was told to give it a kiss of veneration. He refused and when the picture was pushed up to his face, the prisoner seized the picture and threw it into the sea, saying, "Let our Lady now save herself: she is light enough: let her learn to swim." After that, according to Knox, the Scottish prisoners were no longer forced to perform such devotions.
In February 1549, after spending a total of 19 months in the galley-prison, Knox was released. It is uncertain how he obtained his liberty. Later in the year, Henry II arranged with Edward VI of England the release of all remaining Castilian prisoners. On his release, Knox took refuge in England. The Reformation in England was a less radical movement than its Continental counterparts, but there was a definite breach with Rome. The Archbishop of Canterbury, Thomas Cranmer, and the regent of King Edward VI, the Duke of Somerset, were decidedly Protestant-minded. However, much work remained to bring reformed ideas to the clergy and to the people. On 7 April 1549, Knox was licensed to work in the Church of England. His first commission was in Berwick-upon-Tweed. He was obliged to use the recently released Book of Common Prayer, which was mainly a translation of the Latin mass into English and was largely left intact and unreformed. He therefore modified its use along Protestant lines. In the pulpit he preached Protestant doctrines with great effect as his congregation grew.
Knox was then told to preach in Buckinghamshire and he remained there until Edward's death on 6 July. Edward's successor, Mary Tudor, re-established Roman Catholicism in England and restored the Mass in all the churches. With the country no longer safe for Protestant preachers, Knox left for the Continent in January 1554 on the advice of friends. On the eve of his flight, he wrote:
Sometime I have thought that impossible it had been, so to have removed my affection from the realm of Scotland, that any realm or nation could have been equal dear to me. But God I take to record in my conscience, that the troubles present (and appearing to be) in the realm of England are double more dolorous unto my heart than ever were the troubles of Scotland.
Knox disembarked in Dieppe, France, and continued to Geneva, where John Calvin had established his authority. When Knox arrived Calvin was in a difficult position. He had recently authorised the execution of the scholar Michael Servetus for heresy. Knox asked Calvin four difficult political questions: whether a minor could rule by divine right, whether a female could rule and transfer sovereignty to her husband, whether people should obey ungodly or idolatrous rulers, and what party godly persons should follow if they resisted an idolatrous ruler. Calvin gave cautious replies and referred him to the Swiss reformer Heinrich Bullinger in Zürich. Bullinger's responses were equally cautious; but Knox had already made up his mind. On 20 July 1554, he published a pamphlet attacking Mary Tudor and the bishops who had brought her to the throne. He also attacked the Holy Roman Emperor, Charles V, calling him "no less enemy to Christ than was Nero".
In a letter dated 24 September 1554, Knox received an invitation from a congregation of English exiles in Frankfurt to become one of their ministers. He accepted the call with Calvin's blessing. But no sooner had he arrived than he found himself in a conflict. The first set of refugees to arrive in Frankfurt had subscribed to a reformed liturgy and used a modified version of the Book of Common Prayer. More recently arrived refugees, however, including Edmund Grindal, the future Archbishop of Canterbury, favoured a stricter application of the book. When Knox and a supporting colleague, William Whittingham, wrote to Calvin for advice, they were told to avoid contention. Knox therefore agreed on a temporary order of service based on a compromise between the two sides. This delicate balance was disturbed when a new batch of refugees arrived that included Richard Cox, one of the principal authors of the Book of Common Prayer. Cox brought Knox's pamphlet attacking the emperor to the attention of the Frankfurt authorities, who advised that Knox leave. His departure from Frankfurt on 26 March 1555 marked his final breach with the Church of England.
After his return to Geneva, Knox was chosen to be the minister at a new place of worship petitioned from Calvin. In the meantime, Elizabeth Bowes wrote to Knox, asking him to return to Marjorie in Scotland, which he did at the end of August. Despite initial doubts about the state of the Reformation in Scotland, Knox found the country significantly changed since he was carried off in the galley in 1547. When he toured various parts of Scotland preaching the reformed doctrines and liturgy, he was welcomed by many of the nobility including two future regents of Scotland, the Earl of Moray and the Earl of Mar.
Though the Queen Regent, Mary of Guise, made no move to act against Knox, his activities caused concern among the church authorities. The bishops of Scotland viewed him as a threat to their authority and summoned him to appear in Edinburgh on 15 May 1556. He was accompanied to the trial by so many influential persons that the bishops decided to call the hearing off. Knox was now free to preach openly in Edinburgh. William Keith, the Earl Marischal, was impressed and urged Knox to write to the Queen Regent. Knox's unusually respectful letter urged her to support the Reformation and overthrow the church hierarchy. Queen Mary took the letter as a joke and ignored it.
Shortly after Knox sent the letter to the Queen Regent, he suddenly announced that he felt his duty was to return to Geneva. In the previous year on 1 November 1555, the congregation in Geneva had elected Knox as their minister and he decided to take up the post. He wrote a final letter of advice to his supporters and left Scotland with his wife and mother-in-law. He arrived in Geneva on 13 September 1556. For the next two years, he lived a happy life in Geneva. He recommended Geneva to his friends in England as the best place of asylum for Protestants. In one letter he wrote:
I neither fear nor ashamed to say, it is the most perfect school of Christ that ever was in the earth since the days of the apostles. In other places I confess Christ to be truly preached; but manners and religion so sincerely reformed, I have not yet seen in any other place...
Knox led a busy life in Geneva. He preached three sermons a week, each lasting well over two hours. The services used a liturgy that was derived by Knox and other ministers from Calvin's Formes des Prières Ecclésiastiques. The church in which he preached, the Église de Notre Dame la Neuve—now known as the Auditoire de Calvin—had been granted by the municipal authorities, at Calvin's request, for the use of the English and Italian congregations. Knox's two sons, Nathaniel and Eleazar, were born in Geneva, with Whittingham and Myles Coverdale their respective godfathers.
In the summer of 1558, Knox published his best known pamphlet, The first blast of the trumpet against the monstruous regiment of women. In calling the "regiment" or rule of women "monstruous", he meant that it was "unnatural". The pamphlet has been called a classic of misogyny. Knox states that his purpose was to demonstrate "how abominable before God is the Empire or Rule of a wicked woman, yea, of a traiteresse and bastard". The women rulers that Knox had in mind were Queen Mary I of England and Mary of Guise, the Dowager Queen of Scotland and regent on behalf of her daughter, Mary, Queen of Scots. Knox's prejudices against women were not unusual in his day; however, even he was aware that the pamphlet was dangerously seditious. He therefore published it anonymously and did not tell Calvin, who denied knowledge of it until a year after its publication, that he had written it. In England, the pamphlet was officially condemned by royal proclamation. The impact of the document was complicated later that year, when Elizabeth Tudor became Queen of England. Although Knox had not targeted Elizabeth, he had deeply offended her, and she never forgave him.
With a Protestant on the throne, the English refugees in Geneva prepared to return home. Knox himself decided to return to Scotland. Before his departure, various honors were conferred on him, including the freedom of the city of Geneva. Knox left in January 1559, but he did not arrive in Scotland until 2 May 1559, owing to Elizabeth's refusal to issue him a passport through England.
With Protestant reinforcements arriving from neighboring counties, the Queen Regent retreated to Dunbar. By now, the mob fury had spilled over central Scotland. Her own troops were on the verge of mutiny. On 30 June, the Protestant Lords of the Congregation occupied Edinburgh, though they were only able to hold it for a month. But even before their arrival, the mob had already sacked the churches and the friaries. On 1 July, Knox preached from the pulpit of St Giles', the most influential in the capital. The Lords of the Congregation negotiated their withdrawal from Edinburgh by the Articles of Leith signed 25 July 1559, and Mary of Guise promised freedom of conscience.
When additional French troops arrived in Leith, Edinburgh's seaport, the Protestants responded by retaking Edinburgh. This time, on 24 October 1559, the Scottish nobility formally deposed Mary of Guise from the regency. Her secretary, William Maitland of Lethington, defected to the Protestant side, bringing his administrative skills. From then on, Maitland took over the political tasks, freeing Knox for the role of religious leader. For the final stage of the revolution, Maitland appealed to Scottish patriotism to fight French domination. Following the Treaty of Berwick, support from England finally arrived and by the end of March, a significant English army joined the Scottish Protestant forces. The sudden death of Mary of Guise in Edinburgh Castle on 10 June 1560 paved the way for an end to hostilities, the signing of the Treaty of Edinburgh, and the withdrawal of French and English troops from Scotland. On 19 July, Knox held a National Thanksgiving Service at St Giles'.
On 1 August, the Scottish Parliament met to settle religious issues. Knox and five other ministers were called upon to draw up a new confession of faith. Within four days, the Scots Confession was presented to Parliament, voted upon, and approved. A week later, the Parliament passed three acts in one day: the first abolished the jurisdiction of the Pope in Scotland, the second condemned all doctrine and practice contrary to the reformed faith, and the third forbade the celebration of Mass in Scotland. Before the dissolution of Parliament, Knox and the other ministers were given the task of organizing the newly reformed church or the Kirk. They would work for several months on the Book of Discipline, the document describing the organization of the new church. During this period, Knox's wife, Marjorie, died in December 1560, leaving Knox to care for their two sons, aged three and a half and two years old. John Calvin, who had lost his own wife in 1549, wrote a letter of condolence.
Knox claimed in his will, "None have I corrupted, none have I defrauded; merchandise have I not made." The paltry sum of money Knox bequeathed to his family, which would have left them in dire poverty, showed that he had not profited from his work in the Kirk. The regent, Lord Morton, asked the General Assembly to continue paying his stipend to his widow for one year after his death; and the regent ensured that Knox's dependents were decently supported.
Knox was survived by his five children and his second wife. Nathaniel and Eleazar, his two sons by his first wife, attended Cambridge University, and died at a young age without issue. His second wife, Margaret, remarried to Andrew Ker, one of those involved in the murder of David Rizzio. Knox's three daughters also married: Martha to Alexander Fairlie; Margaret to Zachary Pont, son of Robert Pont and brother of Timothy Pont; and Elizabeth to John Welsh, a minister of the Kirk.
Knox’s death was barely noticed at the time. Although his funeral was attended by the nobles of Scotland, no major politician or diplomat mentioned his death in their letters that survive. Mary, Queen of Scots made only two brief references to him in her letters. What the rulers feared, however, were Knox’s ideas more than Knox himself. He was a ruthless and successful revolutionary and it was this revolutionary philosophy that had a great impact on the English Puritans. Despite his strictness and dogmatism, he has also been described as contributing to the struggle for genuine human freedom, by teaching a duty to oppose unjust government in order to bring about moral and spiritual change.
Knox was notable not so much for the overthrow of Roman Catholicism in Scotland, but for assuring the replacement of the papal religion with Presbyterianism rather than Anglicanism. It was thanks to Knox that the Presbyterian polity was established. In that regard, Knox is considered the founder of the Presbyterian denomination whose members number millions worldwide.